rs46652899 SNP Detail

Summary

• ID
  rs46652899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATCTG ACCTGGGAAA
  TCACTTGTTG AACAGCTTCT TAAAGAAACA TGTCTACTAA GACCCGGTGT TGCATGGAGG
  TAGGGTTTGA CTGCTGCCTG ACTGCAGCTA GACAGAAATT CAAGAGTCTC CCAGTTCTGC
  ACCAAGAAAT CCTACAGGCC TTCCACCCAT ACAAACTTGC ATAGAAGCTC TAGAGAAATT
  Y
  AGGGATATGC CTGGCCTTGG TCTCCTGGAA CCTGAAGTCC CAAGTTAATG ATTTTTAAAA
  ACACAATATA TCTTGTCTTT GGAAGGGCAG GAGGGGCAAT AAAGGTGGGG TTCAATGTCG
  CCTTTGGCCA TACCAGTCTT ATCTCCTCCC TCATGTGGGA GGAGTTAAGT CCTGAGGATC
  TCTTTTCCAT GCTCAGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62679611	NES17313149	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46652899					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679611	NES17313149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877665 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	209 bp upstream
Gm65897	predicted gene, 65897	10 bp upstream
Tssr143725	transcription start site region 143725	187 bp upstream
Tssr143726	transcription start site region 143726	275 bp upstream
Tssr143727	transcription start site region 143727	298 bp upstream
Tssr143728	transcription start site region 143728	318 bp upstream
Tssr143729	transcription start site region 143729	330 bp upstream
Tssr143730	transcription start site region 143730	353 bp upstream
Tssr143731	transcription start site region 143731	375 bp upstream
Tssr143732	transcription start site region 143732	389 bp upstream