rs46653681 SNP Detail

Summary

• ID
  rs46653681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAACTCAT TAGCTGTGTC
  AGTAAGAGGG CCACAGAAAT AGGGTTCAGC CTGCAGTCCC AGTACTCAAA GTAGAGGCAA
  CAGGATTGCC AAAAGTTCAA AGCCAGCCAG AGATTCTTAG TAACTACTAG GCCTGCATAG
  CAAGATCCTT TGGGGTAGGC GGGTGAGGAA TAAGAATTAA CAATTAAAAG TCCAGCAGAA
  R
  AGGAGGAGCG GAGACTATCA GTCCTGGGGC CTTGACAGCG ATGCCACTGC TGTGTGTGTT
  GCCTTGCTGT TCCCGGGTGG TGGCATGTCA AGGAGAGTTC CCCAGAGCGT ACGTTGATGA
  CAGAGAGCCT GTGTCTTACT ACTTCTGTGC CCAATTTTCA GGGTCATGGA GTCCTGGAGA
  TGCCCTCGGG CACTGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148474309	ENSMUSSNP1554086	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46653681					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	1122 bp distal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	within coordinates
Gm26852	predicted gene, 26852	within coordinates
Rr400148	regulatory region 400148	1693 bp downstream
Rr643124	regulatory region 643124	1732 bp distal
Rr643125	regulatory region 643125	1764 bp distal
Tssr64844	transcription start site region 64844	1730 bp downstream