rs46653766 SNP Detail

Summary

• ID
  rs46653766
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69835630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG GATCAAATTG AGGCTATCAG
  C
  TTGGTGGTGA GCACATTTAT GCACT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137860567	ENSMUSSNP2852614	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46653766					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69835630 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	1488 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	1616 bp proximal
Rr265514	regulatory region 265514	170 bp proximal
Tssr116527	transcription start site region 116527	1399 bp downstream
Tssr116528	transcription start site region 116528	1418 bp downstream
Tssr116529	transcription start site region 116529	1425 bp downstream
Tssr116530	transcription start site region 116530	1749 bp downstream
Tssr116531	transcription start site region 116531	1804 bp downstream