rs46655368 SNP Detail

Summary

• ID
  rs46655368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTAGAT GCATCATAGC
  AGACATTCCT GATATCTCAG TACTTTGGAA GTGAAAGTTC TAAAGGAGGA GAATCAATTC
  TTGCCTACAG TTCAATGTAC TTGGGCCAAG TTACTAATTT ATGGAATTAT GGGAAATTAT
  GTCGATTAAA TTAGAAAACA GAAAGCAAGT TGATCACAAA TTTTAGTTGT GAAATTAAAA
  Y
  TTCAGAAGTG AACAAATTAA GCCTGATTAA AGACATTTAG CACACTGATA AATACCCAGG
  ATTTCCTTTT CAAACATGAA GTCAAAATAG AAGTTTCGTC AGCAAAGAGC ACTTTTCCAT
  TGTTGAAACA TCTTCCTCTC AAACTCCAAG TTGAATGATG TGTTTGATAT TGAGGCATAC
  TTCAGCCTGG AAAAGCTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135841016	ENSMUSSNP548688	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320948043	CHEV_3_126481533	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46655368					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1747 bp upstream
Tssr31580	transcription start site region 31580			1782 bp upstream
Tssr31581	transcription start site region 31581			1793 bp upstream