rs46655743 SNP Detail

Summary

• ID
  rs46655743
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156768147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTGTGAAG GGACCAAATT CGTTTTGATT TCCTTTTTCC
  CTATAATAAC TAATCAAAAC AGTGGATTCT TTTATGCAGA AGAAAGTTAA ACACTGTCCC
  C
  TTTGACCACT GTTCCCTTCT GTGGAGAAGG TAGAAGAACG CTCCTTCATC CCCTTGGTTA
  AAACATGCCC ATGCAAAAGT AGGTGGAAGA TAAAAACGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809598	ENSMUSSNP2045145	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46655743					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156768147 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	382 bp downstream
Cpgi904	CpG island 904	348 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	951 bp upstream
Rr367037	regulatory region 367037	1578 bp downstream
Tssr9581	transcription start site region 9581	888 bp downstream
Tssr14475	transcription start site region 14475	1768 bp upstream
Tssr14476	transcription start site region 14476	1724 bp upstream
Tssr14477	transcription start site region 14477	1028 bp upstream
Tssr14478	transcription start site region 14478	962 bp upstream
Tssr14479	transcription start site region 14479	920 bp upstream
Tssr14480	transcription start site region 14480	537 bp upstream