rs46663341 SNP Detail

Summary

• ID
  rs46663341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCTGACA TAAAATGCTA AGTAGGTAGG
  CTGTCGATGG TAGTTAGGAG ATGCCTCTGG ACATGATATG AAACTTCCTG AATGCTAGAC
  ATTAGTCTCC ATGACCCTGC CTTCAAGCTT TTAAGTCTCC ACATCTCTAT AAAGTATCAA
  Y
  TACAATGTAT CTATCAAGTC TAACATCTTT TCTCCCTAAA AGGCACTTTA TGTTTCTTAC
  AGACATTTAT AAAACTTCAA TGGTTCTTGA TGCTGGAATA AACTGTTGTC TGTGGTCGAT
  ATAATTTCTC AACAATAGTA ACTGGAAAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135386114	ENSMUSSNP2109685	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320812949	CHEV_3_80714993	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46663341					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1999 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1467 bp upstream
Rr578673	regulatory region 578673	1736 bp proximal