rs46663485 SNP Detail

Summary

• ID
  rs46663485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCCTGTT TGGGGGAGGC
  CAAGTACTTC AGGGACCATA CCTAAAACAA GCTTGCTAAA TAGGTCAGTG GTGGCACAAG
  CCTTTAAGCT CGGCTCTTAG AGGAGGCAGA GGCAGGGGGA TCTCTGTGTG TTTGAAGTCA
  GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAC AGAGAAAAAA AAAGTCTGAA
  R
  AAAGAATTAA GACAACAACA AAAATAGCAT GCTACATAGG TAGCCGTCAT TACCCTTGTA
  TCCATGACAT CCATCATTAC CCAGGTATCT TCTGAGCTCT TTAATAGCAA CCACAGTGTG
  GACTTAACAC TTTGTATGTT CTGTTTGGTT TGGTTTGTTT TCTTGAGACA AGATTTCTCT
  CTGTAGGCTG TCCTGGAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147514289	ENSMUSSNP1462774	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320498562	CHEV_2_126757032	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46663485					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1471 bp proximal
Gm75308	predicted gene, 75308			1397 bp upstream
Rr564422	regulatory region 564422			1033 bp proximal
Rr564423	regulatory region 564423			1759 bp proximal
Rr564424	regulatory region 564424			1792 bp proximal
Rr564425	regulatory region 564425			1929 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			605 bp downstream
Tssr26085	transcription start site region 26085			1697 bp downstream
Tssr26086	transcription start site region 26086			1826 bp downstream
Tssr26087	transcription start site region 26087			1857 bp downstream
Tssr26088	transcription start site region 26088			1919 bp downstream
Tssr26089	transcription start site region 26089			1933 bp downstream