rs46664425 SNP Detail

Summary

• ID
  rs46664425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99450408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGTGGT AGGGACTTGA
  CAGAAGACGC ACAGCCCTGG TCTGGCAGCT CTGTGCTGTG GCAGCTTAAG AGTTCGCACC
  TCTTCTAGCC ACAGCCCTGG AGAGCGAAGT GGACTCTAGG TTCCAGGCCT GTCCTGAACC
  CTCGCAGGCA GCGAGCTCCG TCCCGAGAAG CAACAGCGCA GGGAGGAAGA CGGGAGAAGG
  Y
  TCGGCCAAAC CCAAGCCGCG CCCATGGGCC GGCTGCCTGG AGCCCGACCT CCCCGCCGGC
  CGAACGGCCG CCGTCCTGGG AACCCGCACC GGTGGGAGCT CTCGAGTAGG AGACGCCTCC
  GACTCGGCCC GGGTCGCGTG CATCCCAGCT GAGGCCACCG CAGTGGGTGG TGCTCGGGAG
  GCTCAGGGCG CCGGGGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61443617	NES16826049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46664425					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443617	NES16826049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99450408 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	within coordinates
Cpgi22196	CpG island 22196	within coordinates
Rr401625	regulatory region 401625	450 bp upstream
Rr685420	regulatory region 685420	within coordinates
Rr685421	regulatory region 685421	284 bp proximal
Tssr91072	transcription start site region 91072	285 bp downstream
Tssr91073	transcription start site region 91073	494 bp downstream