rs46665529 SNP Detail

Summary

• ID
  rs46665529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87753339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATGTGG GTGTTTACCT
  GTGTGAATGG CTGTTTACCA TATATGTGCA GTACCCGTAT CATATCAGGG GGCATCAGAT
  TCCCTGGAAC TGGAGTCACA GGCGGTTGTT AGCTGCCCTG TGGGTTTGGG GATTTAAACC
  TTAACCATGA ACCATTCTCC AGCCCCACTT TCCTTTTTTG GAATTTGATA GCTTTTGCTG
  R
  CCAATACAGC AAGGCACTGG ATTTGAAAAT ACTGGGCTTA ATCTGTTATG TCACCCTTGA
  ATCCCAAGTT GGCTCGTTGT CCACCTTCTC AGGCCTATAG GCTAAGTACA GGTCCCCAGC
  AGTGCTTTCC TGAGTAGTGA TGTGTGACGT CTTCCCTTGA ATGAGCATCT AACAAAGGTC
  AGCTCTGTTG TATGCTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60762272	NES16403481	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs46665529					SNP	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762272	NES16403481	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87753339 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	735 bp upstream
Rr414853	regulatory region 414853	639 bp distal
Rr414854	regulatory region 414854	544 bp distal
Rr414855	regulatory region 414855	1441 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron