rs46665835 SNP Detail

Summary

• ID
  rs46665835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGGGA GTGTGAAAGA
  CCACCCAAAC ACACAGTATC CCTCCATACC AGCTGCAGCG GGCGCTCAGC TGTGCCTGGG
  TGTGCTGTTG GCTGCTTGTG CCTAGGAAGG AATGCAGGCT CTCTGTCGCT TGTTCCTCCC
  CTTTTGCCTC CTCTCCCTAA GCATCTCTGA GTGACCATGC CTATTTCTCT CTGCTTCCTA
  R
  TGTGTGTGGC TTGTGGGAGC CCTGGGCTCA TTTCCTGGTC TCTCTGCCGT AGTGTGCATT
  TCTAGAAATG GTTTAAAAAT TCTCAGCGAC TGGTAAGAGA GAGAAATCGA GTTTCTTTTT
  CTTTTTTCTT GCTAGCCCAT CATATAAGGG TAAACTGGGG GGCATGAAAG TAAAACAACG
  AATGGTTTTG CTTTCCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874511	ENSMUSSNP1885871	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320958005	CHEV_3_127600382	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46665835					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	941 bp distal
Fam241a	family with sequence similarity 241, member A	1141 bp upstream
Rr398009	regulatory region 398009	891 bp downstream
Rr584896	regulatory region 584896	1445 bp distal
Rr584897	regulatory region 584897	650 bp distal
Tssr35607	transcription start site region 35607	1951 bp upstream
Tssr35608	transcription start site region 35608	1231 bp upstream
Tssr35609	transcription start site region 35609	1194 bp upstream
Tssr35610	transcription start site region 35610	1127 bp upstream