rs46666034 SNP Detail

Summary

• ID
  rs46666034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:95758972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTCAGC TGCAGGATTG
  CAGCCTGGTG CTGGAGGCTG GCACATGCCA TTAATCTCCA GCACTCAGAA GGCAGAAGCA
  GGCAGATCTC TGTGAGATCA AGGCCAGCCT GGTCTACAGA GCAAGTTTCA GGACAGCCAG
  GGCTACACAG AGAGACCATC TCAAAAATAA ATACATTGTT TCAAGGGAAG CTAGCAGCCA
  R
  CTGCCGCCTC AGTGTGCTGT AGATATTTTC CTTAGCAGTC GGAAGTTGCT AAACTGAAGA
  TTGGCTTTGT ATTTTAATCT AATGGGTTAT TGCCTGGTTG GTTTTTAAAA TTTGCTTAAT
  AGTATCCTTG ACATATAGAA GCTTTTAATT GTGTCAGGCT AATCAATATT TCCATTTAGC
  CTCTTATTTT GTTATGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60249364	NES15760547	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46666034					SNP	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60249364	NES15760547	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:95758972 () rs orientation: forward

Symbol	Name	Function Class
D16Jhu52	DNA segment, Chr 16, Johns Hopkins University 52	1696 bp distal
Rr520451	regulatory region 520451	1771 bp distal
Rr520452	regulatory region 520452	889 bp distal
Rr520453	regulatory region 520453	939 bp distal