rs46666606 SNP Detail

Summary

• ID
  rs46666606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74860774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG CCTGGAGAGC CCAGGGGCGG
  R
  GAACAGGGGT GCTAGGCCCG AGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136638904	ENSMUSSNP4731181	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss323007477	CHEV_9_74801299	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46666606					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74860774 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	within coordinates
Cpgi22037	CpG island 22037	within coordinates
Gm68252	predicted gene, 68252	675 bp upstream
Rr401515	regulatory region 401515	1355 bp downstream
Rr401516	regulatory region 401516	462 bp downstream
Rr683033	regulatory region 683033	1670 bp distal
Rr683034	regulatory region 683034	1756 bp distal
Rr683035	regulatory region 683035	686 bp distal
Rr683036	regulatory region 683036	395 bp distal
Rr683037	regulatory region 683037	within coordinates
Tssr86114	transcription start site region 86114	557 bp downstream
Tssr86115	transcription start site region 86115	401 bp downstream
Tssr86116	transcription start site region 86116	283 bp downstream
Tssr86117	transcription start site region 86117	69 bp upstream