rs46667793 SNP Detail

Summary

• ID
  rs46667793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAAGGTCA GATGCCAAGA GGGCCGGGCA GTACTTCACA
  GGCTCCTCCC ACAGCAAGGA GAGTTTGACA GGCTCCTCCC ACAGTAGGGA GTGCTGGCCT
  Y
  TCTTCCAAGC TACTGGGACC ACTTCCTCTT TTTTCACTCT GAAGATAGGA ACTGCCCCAA
  GGCAGTCAGA AGCGATGGGC AGATTCCAGG CTGTGGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60557923	NES16578188	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		C	C	C	C	C	C
ss145431551	ENSMUSSNP2041470	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46667793					SNP	T	T	T	T	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557923	NES16578188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579868 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	10 bp upstream
Rr405148	regulatory region 405148	within coordinates
Tssr143531	transcription start site region 143531	15 bp upstream
Tssr143532	transcription start site region 143532	29 bp upstream
Tssr143533	transcription start site region 143533	62 bp upstream
Tssr143534	transcription start site region 143534	75 bp upstream