rs46668193 SNP Detail

Summary

• ID
  rs46668193
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78871476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGTAGG AGGGCCCAGG
  CCACTGTGGT CCTTAGATAG GTGGGTGTGA ATTGTATTAG AAAGGGAGAT GATCACGCCA
  GTACACCCAT CTCTGCTTCA GTTCCTGCCT CCAGGTTCTT CCCTTGAGTC TCTCTCTGCC
  TTGCATTCTC TGGACGATGG TTTGGTGAAA CAAGCCCACT CCTTCCCAAG TTGCTTTCGG
  W
  CATGGTGTTT ATCACAGCAA CAGAGACATG GATAGCAAGC TACCATCTGG GGGCAGAAGC
  TGAAATATTA TCACCAGGGA AGGGGAGTGG ATGCCATTTA AGATACTAAT GAGAGTATCT
  GGCTCAGAGA TAGAGGCGGT ATAGATGCAT TGTATACCAT GCCCCTAGTG AAGACATGAG
  AGCAAGGAAC ACCCAAATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60421442	NES15923007	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46668193					SNP	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421442	NES15923007	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78871476 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	1285 bp downstream
Rr578452	regulatory region 578452	227 bp proximal