rs46669008 SNP Detail

Summary

• ID
  rs46669008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145399969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAACCCAGT CAAAGGAACA AAACTAATCT CTGAAATGAA
  TCCAAGGGAA AGAGCAGCCT CCAAATTAGC TATATTCCCA AAAAATATAT GTTCCCAAAT
  R
  TATGTATTTA CAACAATTAA TGAGTAAAAA GGCCATGAAT TTGAAAGAGA GCAAGATGAG
  TTTGTGGAAT GGCTTGGATG GGAGGAAAAG GACAGGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147835185	ENSMUSSNP5109655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46669008					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145399969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566543	regulatory region 566543			1949 bp distal
Rr566544	regulatory region 566544			204 bp distal
Rr566545	regulatory region 566545			302 bp distal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant