rs46669390 SNP Detail

Summary

• ID
  rs46669390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCA GTCAACTCCA GAGACATACC
  Y
  ACAAGCTAAC TCAGTGTAGA CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120014405	PARCsnp_1.09774	PARC_SEQ	INBRED	f	SNP			T	C
ss146193172	ENSMUSSNP5495776	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320125582	CHEV_1_174403632	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46669390					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301068 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	522 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	481 bp downstream
Rr396588	regulatory region 396588	163 bp downstream
Rr423578	regulatory region 423578	1565 bp proximal
Slamf9	SLAM family member 9	1859 bp upstream
Tssr10198	transcription start site region 10198	1870 bp upstream
Tssr10199	transcription start site region 10199	1886 bp upstream
Tssr10200	transcription start site region 10200	1926 bp upstream
Tssr15219	transcription start site region 15219	1664 bp downstream