rs46670297 SNP Detail

Summary

• ID
  rs46670297
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:8545031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGGGGG AAGGAGAGCT
  ATGCTTGGTC AATGTCTACA GCTCCTGCTA CCTTGAGGAA CTCTGCTCAA CAGGCACGAT
  CTGATCAGGT TCCAGTTTTT GCTCCAGTGA TACCTTTTGT GTGATCAGAA CTCTAAGGGT
  CTTTGAAGAA ACCCACCATA GTGCACTCTC TAGTTCTACC AAGTCCTCTG GTCTTGAGCA
  S
  GGATTACTTA GGGAGAGAAT GGGCAACCTC CTTCTCACCC TGGAGCTGAG ATTAAACGGG
  GGAGATAGAC CTCAGGATTT TGTACCCATA GGATAGAAAA ACAGAGACCA GCTCTTTACT
  AGTGGCATCT CAATAACTAC GAGCCTTTTT TAACAACAAC AGCACCAGCA GCAACAACAA
  CAACTGACCC CCACTCCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60683955	NES16235418	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46670297					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60683955	NES16235418	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:8545031 () rs orientation: forward

Symbol	Name	Function Class
Rr673824	regulatory region 673824	777 bp distal
Rr673825	regulatory region 673825	865 bp distal
Trpc6	transient receptor potential cation channel, subfamily C, member 6	Intron
Tssr83785	transcription start site region 83785	805 bp downstream
Tssr83786	transcription start site region 83786	772 bp downstream
Tssr83787	transcription start site region 83787	498 bp downstream