rs46673508 SNP Detail

Summary

• ID
  rs46673508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57525374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGGTCT TATTAAGTTA
  CCCCTGCTAT TCTCAAATTC ATGATCCTCC TGCCCCACAC CTCCCAAGTG CTGGGATCCC
  AGGGCACACC TTATACCTGG CTTACAAAGT GCTGGAGAGG GAGCCTGGAA CTTTGCATGA
  ACTAATTGAG CACTCTCTTC TGAAGCCTAG CCAGTTCTAA GTTTCTGTAA CATCTGGGCC
  Y
  TAAGACAATC CTTGCTGTCT CAGAGCCCAG GTCAACAGCA GGGAGATCTG AAGGCTAGAG
  GCAGCAGATG CCCCGAGGAC TCACCACGAC CTTCAGTGTC TTCTTGACAC CATCACTGAT
  GAAGTGATTG AAGACAGCAG CCTTGACCTC CACCTCTTGT TGGCCGATCT TCAAGGGGAC
  AATGACATAC GGTACAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812232	NES17355851	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46673508					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812232	NES17355851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57525374 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	within coordinates
Mir6978	microRNA 6978	1146 bp upstream
Rr405394	regulatory region 405394	810 bp upstream
Rr529295	regulatory region 529295	963 bp proximal
Tssr148927	transcription start site region 148927	1204 bp upstream
Tssr148928	transcription start site region 148928	475 bp upstream
Tssr148929	transcription start site region 148929	230 bp upstream
Tssr148930	transcription start site region 148930	177 bp upstream
Tssr148931	transcription start site region 148931	132 bp downstream
Tssr148932	transcription start site region 148932	282 bp downstream
Tssr148933	transcription start site region 148933	498 bp downstream
Tssr148934	transcription start site region 148934	1806 bp downstream