rs46674742 SNP Detail

Summary

• ID
  rs46674742
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAGGGG CTTCAAAGGA
  GGAGGGGGAA GGGAGAAAAG ATCGAGCTTT CCATGTTTTA TAGTTTAGTC TGAGGGAGAT
  GCATTCTGAT TTCTACAATG CACCTTGAAG TAGGGGAATT TTGGTTTCCG GGAACTGGCT
  TTGCTTTGGG GGACACACAA GGTATGAAAA AAGGACAGGA GCTCAGAGAC ACCTTGCTTC
  T
  GAGGCCTTTC CAATTCCCTT CCATTCAAGG CAGCCAGCAC GCCAGCACAA GGTGTCCCAT
  TTTGAGGTAA TGCATTCTGA GCTTAATCAT GAGCAATATA AAAATTATAA TAAGGTAAGC
  TGTTCAGTGA TGAATTTTAA TGTCTTGGTT ATAGTTGGGA AAGTCTGCGT TTGCTTCATT
  TAACATTGAA TACATTAAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss133020681	ENSMUSSNP7111118	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46674742					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	583 bp proximal
Gm55211	predicted gene, 55211	334 bp upstream
Gm55212	predicted gene, 55212	845 bp upstream
Gm55213	predicted gene, 55213	1810 bp upstream
Rr626833	regulatory region 626833	148 bp distal
Rr626834	regulatory region 626834	485 bp proximal
Rr626835	regulatory region 626835	1452 bp proximal
Rr626836	regulatory region 626836	1623 bp proximal
St7	suppression of tumorigenicity 7	488 bp upstream
Tssr55085	transcription start site region 55085	515 bp upstream
Tssr55086	transcription start site region 55086	813 bp upstream
Tssr55087	transcription start site region 55087	873 bp upstream
Tssr55088	transcription start site region 55088	913 bp upstream
Tssr55089	transcription start site region 55089	959 bp upstream
Tssr55090	transcription start site region 55090	1078 bp upstream
Tssr59909	transcription start site region 59909	1603 bp downstream