rs46675087 SNP Detail

Summary

• ID
  rs46675087
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44237162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTGCATG CCTAAGACAA TAGTCCACGG
  GCTTCATATT CTGCTGGTCA ACTTAAGAAC TAATCAAGAA CAGGCACAAT AAGAATATTG
  TCAGAAATAT CAGGCTTCTC CCACCTTGTC TTGGAAGTAT CCAGGGCAGC CATTAGAAGT
  W
  AAAAAAAAAT CACCTTTTCC TCTTTCAACT CTGGAATATT CTATAACTAT ATGGCCTGGC
  CATTGCTCTG CATATACATT GGCACCATCT TTTGAACCTG ATTCTCACAG GATAGTTTCT
  CTGACATTAT TGAAGCACAT AGAGCTACCC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149023657	ENSMUSSNP5779870	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319706545	CHEV_1_44254847	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46675087					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44237162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi227	CpG island 227	644 bp proximal
Rr410478	regulatory region 410478	229 bp proximal