rs46675137 SNP Detail

Summary

• ID
  rs46675137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185320769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAGTTAT TTCTTTAGAA
  GCTTCCACAG AGTTCCTTCC CACAGGCCAA GCATGTGTCA GAGGCCAGAG ATGTGAATCC
  TCATAAGCTC CACAGATGTT TCAGACCTGT TTGATGTAGA GCATTGTGCT GGAATCCAGC
  ACAATGAGAT GCAATCCATG TCCCCAGGAA ATCTGGGCTC AGTGCAGGAC ACCTCCCTCA
  Y
  TTGATACATG GAGTTTTAGC AACGAGGAAG CCTGCGGGAG GCTTAAGTGA CATCTCCTCA
  CACATGCAAT GATGATGACG GGAACTGATT ATAACACAAT ACAGTTGTCA AAATATTAAA
  CGGACACATT AGTGCTAAGT GCTAAGTACT GAACATGTAA ACCATGGTTC CTGGTGGTCA
  CAGATCCTTC TCAGGGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146437026	ENSMUSSNP5860221	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320177570	CHEV_1_187412451	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46675137					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185320769 () rs orientation: forward

Symbol	Name	Function Class
Rr425415	regulatory region 425415	within coordinates