rs46676015 SNP Detail

Summary

• ID
  rs46676015
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14556564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGGGGTG TGGATTACTG
  CTGATGCCCC TGGGAGACGA TGCCTTCTCA AAGTAACCAG TTTCCAGCCC ATCCTGTTAT
  TTTAGCTTGC AGTCTCATTG CAGAGCTAAG AATGTGGCCT GAGTGTGAGG TAGCTCAAGT
  CCCCAACCAC ATTCCTCTCT GTACATTGGT GAAGAAACGT TCTCAAGCAA ATGTTGTCAC
  W
  TCCACATCTT AGGCAAAGAG CTTTCTTTTT ACTTTCATGT ATGTTACTGA CTCCTAGAAT
  TTCAGGGAAT GAGGGGAGAA TAAAAAGAAA AAGAGGGAGA TAGGAGGTGA AAGAGAAGGA
  AAAAGGAAAG GAGGAAAGAT GAAGGGAAGA AAATATAGTC TAATATATAT ATATATACAT
  ATATATATAT ATATATATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60690266	NES16226420	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46676015					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60690266	NES16226420	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14556564 () rs orientation: forward

Symbol	Name	Function Class
Amotl1	angiomotin-like 1	212 bp upstream
Gm34263	predicted gene, 34263	within coordinates
Tssr2784	transcription start site region 2784	1652 bp downstream
Tssr83841	transcription start site region 83841	1611 bp downstream
Tssr88175	transcription start site region 88175	1726 bp upstream
Tssr88176	transcription start site region 88176	1697 bp upstream