rs46676435 SNP Detail

Summary

• ID
  rs46676435
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44023516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAAATTT AAAAATAGAG
  AGAAAATACT AGTGAAAAAT ACTGTATCTG TATTGTCTAT ACAACTATTT TTCCTTGACA
  TTATTTCCTA AGTAAGATAT TTCACCACCA CGTATACAGC ACTTATAGCA TATTCGGTAT
  TAAGAATGTT CTAGAGATGA TGAGGGATGG GGAAGGAAGC TGTGATGGCA ACACAGCCTG
  W
  ATTCCCAGTG CCCGGAAGGC TGTGGAATGA GGGTGAAGGT TCCGTTGGGT CTGGGCTAAA
  CCTGGGACTC TAAGTGATAA TGAAAACAAC AACAATAAAG TCTGTGCTAG GACCTGGGCG
  CAGTGGAAGC TGCACTGATC ATCTGGCCGT CTGCTTTGAA CTTCTAGAAC TTCCTCCCAG
  GTGGAGTGAA ATGCTTGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147091234	ENSMUSSNP7062201	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46676435					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44023516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	937 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	1435 bp distal
Gm67081	predicted gene, 67081	538 bp upstream
Rr430916	regulatory region 430916	1323 bp proximal
Rr430917	regulatory region 430917	1442 bp proximal
Rr430918	regulatory region 430918	1525 bp proximal
Tssr97502	transcription start site region 97502	1267 bp downstream
Tssr97503	transcription start site region 97503	1296 bp downstream
Tssr97504	transcription start site region 97504	1327 bp downstream
Tssr97505	transcription start site region 97505	1421 bp downstream
Tssr97506	transcription start site region 97506	1442 bp downstream