rs46676461 SNP Detail

Summary

• ID
  rs46676461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19242408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCGGAA GGAAGGCCAT
  ACCGGGTCTC CGAGGCTCCG AGCCCAAGGG GTCCGCTGCC TGGCGGAAGT GAGCCGGTCT
  CTCGCAGCGT CACGTGAGCC GAGTTATGGC CAATAGGAAA GCGGTTAGAC AAGTCGCTTC
  CGTAGTGTGG GTTTATTTAT TTATTTGCTT ATGTATTTAG GAAAATTCCG TTTGACGCGT
  R
  AATTTATTTT TTTTAATCTT GGACCCTCAC AGGAATCAGA GACTCAGCCA ATTGGATGTC
  CGAAGACTCG GGAGCAGGGA GGGAAGCGAA GAAAGGGCGG AAGATGTTAA CAGCGCGGCC
  AAGGAAGGGG CTCGGTGGAC CCGCCTCCTG GCTTTCAAGA AGCAGGCGGA GCTAAATAGG
  ATCACCAATC AGATCGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148477871	ENSMUSSNP4110080	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46676461					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19242408 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	113 bp upstream
Cpgi18495	CpG island 18495	within coordinates
Gm74038	predicted gene, 74038	347 bp downstream
Rr155319	regulatory region 155319	1808 bp distal
Rr167175	regulatory region 167175	within coordinates
Rr400150	regulatory region 400150	39 bp upstream
Trappc6a	trafficking protein particle complex 6A	187 bp upstream
Tssr64863	transcription start site region 64863	1123 bp downstream
Tssr64864	transcription start site region 64864	231 bp upstream
Tssr64865	transcription start site region 64865	260 bp upstream
Tssr64866	transcription start site region 64866	277 bp upstream
Tssr70924	transcription start site region 70924	1789 bp upstream
Tssr70925	transcription start site region 70925	179 bp upstream
Tssr70926	transcription start site region 70926	106 bp upstream
Tssr70927	transcription start site region 70927	94 bp upstream