rs46676634 SNP Detail

Summary

• ID
  rs46676634
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20970453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGCTTGG GGTCCCTGGA TCTGCTCTAC ATGTTGGCTC
  AGAAGCCACA GCTGCCCCCG CCGGGCTACG TCCGGAACAA GTTGGAGAGG TCCGCGCAGG
  S
  AGACCCATCA CTCCCGGGCC GCAGAGCTCG CAGGGGTCCC CGGCTCGCAG CCGCCACGGA
  TTCTGCAGCC GAAGTTGACC TCTCCGAGGA TGGGAGCAAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61578044	NES17526214	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46676634					SNP	C	C	C	C	C	C	C	G	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61578044	NES17526214	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20970453 () rs orientation: forward

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	within coordinates
Cpgi4472	CpG island 4472	314 bp proximal
Rr463638	regulatory region 463638	within coordinates
Rr463639	regulatory region 463639	593 bp proximal
Rr463640	regulatory region 463640	1017 bp proximal
Rr463641	regulatory region 463641	1064 bp proximal
Tssr115849	transcription start site region 115849	593 bp downstream
Tssr115850	transcription start site region 115850	766 bp downstream
Tssr115851	transcription start site region 115851	803 bp downstream