rs46678191 SNP Detail

Summary

• ID
  rs46678191
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135239409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA CTTGGGCTTA TAAACAATTT
  C
  ACAACGAAGT CTAAAGTTAG CAACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145530458	ENSMUSSNP6635823	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319989057	CHEV_1_137208248	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46678191					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135239409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi788	CpG island 788	1628 bp proximal
Rr367008	regulatory region 367008	1978 bp upstream
Rr419124	regulatory region 419124	6 bp distal
Rr419125	regulatory region 419125	1440 bp proximal
Timm17a	translocase of inner mitochondrial membrane 17a	Intron