rs46678509 SNP Detail

Summary

• ID
  rs46678509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78958152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGACTGG TCCGATTGGC
  CCTCAGAGTA GCTGCAGGCC TCCTACCGGG GCTACCTGGT CTCAACGCTT AGAACAAAAG
  GTTGTGCTGC ACGAAAGAAA GAGACCCGGG CTGTGCAGTG AGGGTAAAGA GCCAAGTGTC
  CGCGCACAGG GCTGTCTCCT CCCAAGGAAG GGAGTTTCCT CTTCACCTAA AATCGTGGTC
  Y
  GCTCACCAAG CCAGATCCCA GCAGAAGGGC AGCTGGCGTG TCCCGGCTCC CCCCCCCCCC
  TTCAACTTTG TGGAAAAGTA GCAGAAGTCC GAGATTCTGA AGCCTAGGTT AGGTAAGTTT
  CATTCTAAGA AATCCCTTTA CAACCTAGAT GGAAACTATT CAGGAAAAAA GAAAATGTAA
  AAACCCGAGC GATTCTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61654154	NES17605651	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46678509					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654154	NES17605651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78958152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4797	CpG island 4797	575 bp proximal
Gm46359	predicted gene, 46359	within coordinates
Gm56547	predicted gene, 56547	within coordinates
Rr387474	regulatory region 387474	within coordinates
Tssr114072	transcription start site region 114072	552 bp upstream