rs46678785 SNP Detail

Summary

• ID
  rs46678785
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3691762 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ACGGGGTGCA ATTCCAAGAG
  ACAAAAAGCT AAGTCAGGAA TCAGGAAGCC AGACTCAAAG ATGTTAAAGG GTCAAACACT
  AGCCCATCAC TTTTGTATAG AAGTGTTAAC TACTGTAGAA TAAATAAATA CCCTGGACTG
  AAAGGGGTAA AACCAATTAA AACTATGTGG TTCATATACA CTGCTTTAAC AGTGAGGAAG
  A
  ACAAGCTACC AGGATTGCTT TTCCTCACGT CCCACACAGT GTAAGGCTAA AGTTGAGAGG
  TTTTAGATCT CTGACACGAT AGACTTGGAT ACACTTTAAA AACAAAACAA AACAAAAAAA
  AAAAACAAAA AAAACATCAG TTTAACAACA ACAACAAAAA CCAAAACTCA TCTATTCTTT
  GAAAGTATGC GAACTCCAGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146748249	ENSMUSSNP2409216	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323242339	CHEV_10_6604779	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46678785					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3691762 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	696 bp distal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	within coordinates
Rr224667	regulatory region 224667	within coordinates
Tssr92214	transcription start site region 92214	1491 bp downstream
Tssr92215	transcription start site region 92215	1332 bp downstream
Tssr92216	transcription start site region 92216	1276 bp downstream
Tssr92217	transcription start site region 92217	1091 bp downstream