rs46679991 SNP Detail

Summary

• ID
  rs46679991
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151338336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cctttgtga atgtgttacc tcactcagga
  CCCTCTCTGG TTcttgcttt tgccacttgt catgtctccc accgtgttgg gctctcaccc
  atctgaaacc acccataagt ctatataaac actttgcatt ggttgtgaga ttttatcaac
  K
  caacagcaaa ataTTTCTAG TTCTAATTCT GTTGTGGGTT TTCTTTCTTT TTTGGCTTTG
  ATTTTGGTGG TGAATAAGTA CATAAAATAT GGAAGTATAG ATTTTATCGT GAAACACCAG
  ATTTTATCCT TGATGCCTAT TCTAACTATA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60818536	NES16500304	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	T	G
ss320056675	CHEV_1_153309715	CHEVERUD	SCREENING_POP	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs46679991					SNP	T	T	T	T	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818536	NES16500304	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151338336 () rs orientation: forward

Symbol	Name	Function Class
Rr372239	regulatory region 372239	1079 bp downstream
Rr420294	regulatory region 420294	1118 bp distal
Rr420295	regulatory region 420295	260 bp proximal
Rr420296	regulatory region 420296	1638 bp proximal