rs46680169 SNP Detail

Summary

• ID
  rs46680169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108889458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAAGGGG AGACTCATGG
  AAAGGAGTCT GACAGAGGCA CACGAAGGCT AGGACAGTGT CGTGCTAGCT TACCTTCACA
  GTCAGTCACA TCAGGAAGGG CTCGAATCAG CATGCTGACC CCTGGCATCA CCTGGTCGTA
  CTGATGCAGG ACCTCGACAC AGTGCACAGT GAAGAGCTTG TCCTTCTGAG ATAGGCTATG
  Y
  AGCAGCAGCA CAGTGTCCCG CAGACAGCGT ATCGTCTGCT TCTGCTGGTG GGTCCTTGGA
  CCTCCTGCCC GCCGCACCGT CAGCCATTGC CTGTGCAACA TCACAGTGAG CGCTCTGACT
  GCCTAGGGTG AGAGGGCACA GCCTGAGGTC CAGAGACTTA CTCACCTCAC CACTTCAAGA
  TCAACAGGAT TGCTCTTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61451627	NES16833327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46680169					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451627	NES16833327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108889458 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	within coordinates
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	470 bp downstream
Rr686957	regulatory region 686957	166 bp distal
Rr686958	regulatory region 686958	707 bp distal
Rr686959	regulatory region 686959	561 bp distal
Trex1	three prime repair exonuclease 1	667 bp upstream
Tssr91573	transcription start site region 91573	1985 bp upstream
Tssr91574	transcription start site region 91574	1752 bp upstream
Tssr91575	transcription start site region 91575	1705 bp upstream
Tssr91576	transcription start site region 91576	1619 bp upstream
Tssr91577	transcription start site region 91577	1131 bp upstream
Tssr91578	transcription start site region 91578	684 bp upstream
Tssr91579	transcription start site region 91579	619 bp upstream