rs46680632 SNP Detail

Summary

• ID
  rs46680632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184267873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAAGGAC TGAGTCTTAT
  GGCTCCTTTT AGAGTCTACA TGGCCTGCCA CCCTGCACAA GGCTAGGTTG AACCCTGAGT
  TCTAGACTTC ACCTGAAGTC CAGCATGTCT TCAAACATGT TGAAATGACC ACTCTGCTTA
  TCTCGGACTG GCCCAAGCAT CTTCAATGCA GACCAGTTTC TACCCACCTT TGTCTACCAA
  Y
  ATGTAACCAG TGTCCACTGA CTCAGCCACT GATTCTGCTT CACACTTTCA GGTCTGATGT
  AAAACTCTTG GGTGAAGCTG AGACATTGCC AATCCCCCGT GAGGGGATTT TAGCTGGACT
  GCTTATTCTA TGGTTTCATT TCCCTTGCCT TCCCACAACA TGTTGTTCCT TCCTCCTTAA
  CTTCTTATGT GAGCCTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146418858	ENSMUSSNP4370438	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46680632					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184267873 () rs orientation: forward

Symbol	Name	Function Class
1700112H15Rik	RIKEN cDNA 1700112H15 gene	within coordinates
Gm70799	predicted gene, 70799	within coordinates
Rr425237	regulatory region 425237	1 bp proximal
Rr425238	regulatory region 425238	818 bp proximal
Tssr10585	transcription start site region 10585	1091 bp upstream