rs46680986 SNP Detail

Summary

• ID
  rs46680986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAATTCA GTAAACTTAG
  TATGGTCTCA ATGACACTGT AAGGGAAATG TACTAGACCT TAACTCTTGC TTTCTTGTTT
  CTTGATTTTC ATAGAATTAG AGGCGTGAAT ACCTTGTGGA AGAGATTAAA AGGTAAAATT
  GTATTTACAG GTAAGTTTGC CTTTTATAAA GCCTATCCTG GTTCTACTGG ATGACTATTT
  R
  CATTGTACCG TGGACTAACT TATTTTAGAA TAAAGAGTAT CATTGAATCA ACACTAGTTA
  AACCTACAGA ACTTGCCTAG CATGTGCTTG CCTTCAATTT TTGCATTTGG GAGACCAAGT
  CAGACAGATC TTTGAGTTAA AGGCTAGCCT AATCTACATA CCAAATTTCA GTTTAGCTAG
  GACTGCATAG TGAAAGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961288	NES16169792	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs46680986					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961288	NES16169792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	555 bp distal
Gm56997	predicted gene, 56997	753 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	376 bp downstream
Rr380295	regulatory region 380295	1062 bp upstream
Rr641719	regulatory region 641719	944 bp distal
Rr641720	regulatory region 641720	1086 bp distal
Rr641721	regulatory region 641721	1037 bp distal
Rr641722	regulatory region 641722	764 bp distal
Rr641723	regulatory region 641723	263 bp distal
Rr641724	regulatory region 641724	195 bp proximal
Tssr59650	transcription start site region 59650	1110 bp downstream
Tssr59651	transcription start site region 59651	990 bp downstream
Tssr59652	transcription start site region 59652	946 bp downstream
Tssr59653	transcription start site region 59653	870 bp downstream
Tssr59654	transcription start site region 59654	673 bp downstream
Tssr59655	transcription start site region 59655	604 bp downstream
Tssr59656	transcription start site region 59656	93 bp downstream
Tssr64179	transcription start site region 64179	778 bp upstream
Tssr64180	transcription start site region 64180	743 bp upstream