rs46681935 SNP Detail

Summary

• ID
  rs46681935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:147000540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCT GACAGACACA ACTAAACAAA
  Y
  GCCTATCTTC GAGAAAGCTA AAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144663758	ENSMUSSNP2875701	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46681935					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:147000540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lnx2	ligand of numb-protein X 2			Intron
				Noncoding-Transcript-Variant
Rr378776	regulatory region 378776			1736 bp upstream
Rr399514	regulatory region 399514			129 bp downstream
Rr624842	regulatory region 624842			within coordinates
Tssr54497	transcription start site region 54497			426 bp upstream