rs46682064 SNP Detail

Summary

• ID
  rs46682064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34934116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCCACT GCGCGGATTC
  CGGGAGGAAA AATCAGCATG CTTTGCAGTG CTCAGCGAAG CCAAGAGCAA TGCTCAGCGA
  AGCCAAGAGG CTGTGGAGAC TTGTCACCCC TGTGGAAGCA CTCAGGGGAC AGCGATTTGG
  CCGACCTCAA GGAGGCAAAG GCTAGCAGGG AACACAACGT CTTCCGCTAA AATGTCTTCC
  R
  CGCTGACAGA GGAACGGTTC TGTGAGAGGG CTCGCAAAAC AAAAAGGGTC GTGCAAAAAA
  GAAGAAAAGG TAGCACTCAG GCACCGCTGG GATTCGAACC CAGGATCTCC TGTTTACTAG
  ACAGGCGCTT TAACCAACTA AGCCACGGCG CCGCCCGCAC GGCCTGTGCG AGAAACCAGT
  TCCCATTTCT AGTGACCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60993596	NES16129812	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	G	G		A	A	A	A
ss322156716	CHEV_7_36019710	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs46682064					SNP	G	A	G	A	G	A	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993596	NES16129812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34934116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	within coordinates
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	658 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	79 bp downstream
Rr645337	regulatory region 645337	1306 bp distal
Rr645338	regulatory region 645338	within coordinates
Rr645339	regulatory region 645339	39 bp distal
Rr645340	regulatory region 645340	2 bp proximal
Rr645341	regulatory region 645341	669 bp proximal