rs46683123 SNP Detail

Summary

• ID
  rs46683123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113619406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGGTTA TATTGTCCAG
  AAACAATCCT GTTTGTGTTC TGCTTCATGT GTTCGTGTTC TCCCCACAAC CCCTTGTACC
  TCCCTGCCCC CATCCCCTAT CCCTTATAGC TACTCCCATG GCCCTAGCTG GCCTCTAGCT
  CTTTGTAGAA GGCCTTGACT TATACCTCTC ATGGTTTAAA ACTATAGACA TGTGCCCAGT
  Y
  CTGGCTCTGT TCTCTCCTAA CCTGCCTCTT CCTCAGTTCC AGTCGTTTCA GTCAGTTGTC
  CACAAGTTGC AGCGTGACTT GATTTTTTTC TTCTCATTAA TCAGTCGTTT CTAACTCTGA
  TACATGGACT GTGTCCTGCT TGCTTGCTTT TTCCACCTTC ACTATCAATA CTTTAGGTCT
  CTCTCTCTCT CTCTCTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61225185	NES16842664	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46683123					SNP	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225185	NES16842664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113619406 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr198874	regulatory region 198874	406 bp distal
Rr205836	regulatory region 205836	1994 bp proximal
Rr207499	regulatory region 207499	1406 bp distal