rs46684059 SNP Detail

Summary

• ID
  rs46684059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52648940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACTCT AGTTAAATTA
  AGTAGTAACT TGCCTTGTCC TTCGGTAGTT CGTTTGTTAA TGAATTGAGA CAGTTTGTAT
  AGGTGTTGTA CAGGACTATC TTCTGAAACA AACAAAATCT ATCTTACCAC ATTCTGTAAT
  GTCTACTGGC AAAAGATCAT CTCAGCTGGG CTTGTTGACC CACACCTGCT CATAAAGGGG
  Y
  AGGGAGGTCA GGCGACCCTT ACCTGAGTAT CCACCCTACC TACTGTAGTA CGCAATTTTA
  TCCATAACTA GAAGTGGCCT CGCTGAGGGG AGGGGTAGAG TCTGTAACCT AGGAAGACTA
  AGGGAGTGGG GTGGCTGGGT GGAGAAGTCT TCATCCCGAC TGGGTAAAGG CTTTCTAGGC
  GTAACTTGGG GGGATGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137738291	ENSMUSSNP5360775	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46684059					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52648940 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	within coordinates
Cpgi4596	CpG island 4596	817 bp proximal
Gm24859	predicted gene, 24859	1631 bp upstream
Rr387217	regulatory region 387217	1631 bp downstream
Rr403283	regulatory region 403283	1496 bp upstream
Rr466025	regulatory region 466025	within coordinates
Rr466026	regulatory region 466026	151 bp proximal
Tssr116285	transcription start site region 116285	154 bp downstream
Tssr116286	transcription start site region 116286	206 bp downstream