rs46684940 SNP Detail

Summary

• ID
  rs46684940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152494844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCA TAGATTAGAT CACTGAGGCC
  Y
  GGAGAGATGA AATGACTTTA GACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147970860	ENSMUSSNP1993004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320562903	CHEV_2_152478660	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46684940					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152494844 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	within coordinates
D2Ertd691e	DNA segment, Chr 2, ERATO Doi 691, expressed	1808 bp distal
Rr374088	regulatory region 374088	within coordinates
Rr567410	regulatory region 567410	within coordinates
Rr567411	regulatory region 567411	1121 bp proximal
Rr567412	regulatory region 567412	1418 bp proximal
Tssr26849	transcription start site region 26849	1329 bp downstream
Tssr26850	transcription start site region 26850	1337 bp downstream
Tssr26851	transcription start site region 26851	1364 bp downstream
Tssr26852	transcription start site region 26852	1390 bp downstream