rs46685805 SNP Detail

Summary

• ID
  rs46685805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:17419000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGGGGT GGGACTTGGA
  TTGGGGATTG AGATGTAAAG TGAAAAATAA ATAAATGAAT AAATAAATAA ATAAATAAAT
  AAATAAATAA AATGGAAAAA CATCAAACAG AAAAAAAATT CACTTCCAAT TCTTTCATTT
  GTAGGAACAG GCACTGCAAC ATTTTAAAGG ACGTCCAAGT GTTGTGGGAA AAAATGCCCA
  Y
  CCTGGTCCAA AGGGGACAAG AAGAAAAATA ACATAGAATA TTAAAGATCA AAATTTGTTT
  ACCAAACCTC ACTCCCCAGC CCTACACACA CACACACACA CACACACACA CACACACACA
  CACACACACA CACCCCTGCT GTAAGACATA GTTTCTCTGT GTAGTCCTGG CTATTCTGGA
  ACTTACTATG TAGACCAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss60695310	NES16213256	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T			C
ss322871325	CHEV_9_17312148	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs46685805					SNP	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60695310	NES16213256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:17419000 () rs orientation: forward

Symbol	Name	Function Class
D9Mit295	DNA Segment, Chr 9, Massachusetts Institute of Technology 295	55 bp proximal
Rr203187	regulatory region 203187	1172 bp proximal