rs46686959 SNP Detail

Summary

• ID
  rs46686959
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44741493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACATGCT GACTAGGGAA
  CACTATCACT CGTTAGTGTG TTCATGTATG TGGCGGTTTC ATTAAGGAAA TCATGGAGAG
  GTTGATTCTT TACTAGAACA TAACTATTAA CTCGCATTTT TCACAGACAT AGTTTGTACT
  GTACATAAGT GGATCTGCTC AACAGTTAAA TGGATACCTT TACTGTGAAG TGAGGGAAAG
  G
  TGCTAACTGA TCAGGGCTCC CCCCCCCCCC CACACTTTTA AGGGAAAATG TTAAACATGA
  TGTTCTTCAA TGGAAACTTT TTAAAAATTA TTATACTTAT AAATTATATG CTTCTTATAA
  ACCTTATATA AGTCTACTAT AAACCTCATG TTAAACTTTC TATGAGCCAT ATAAACTTGG
  CATAAAAATA AATCCCGGGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147095014	ENSMUSSNP3293088	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46686959					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44741493 () rs orientation: forward

Symbol	Name	Function Class
Gm47398	predicted gene, 47398	within coordinates
Gm66625	predicted gene, 66625	1516 bp upstream
Rr431017	regulatory region 431017	410 bp distal
Tssr97520	transcription start site region 97520	1397 bp downstream