rs46687459 SNP Detail

Summary

• ID
  rs46687459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:112262210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATAGTTC TTCCTTCTCT
  TGAGCTAGAA TCTCTTTCTC TGCAGCTTTT CCACAGTAGC TCTCTTTGCT TCCATGGTCA
  GCTCAAAACT GAATAGGCAG CTGTTTCCTA AAAGTCCATT TCCAGTTCTA CTGCCAAGTC
  TTCCACAATG GTAAGGTGAA AAGATGAGGC TTCCATTTCC AGGATCACTT CCCAGTTCTC
  R
  GAGCCCTAGC ATAAGTCCTC AGCTGAGGGA GATGGGCCCC AGACTTCCTT TAAGCTTGGT
  CCAGAGACCA CTTTTGTGAG TCGTGTCATT TCTCTGTGTG GGAAGGATAT TCTTTCCATC
  TATCATCACG TGCTGATATA CCATCTACAA TCCTGTTCCT GGAAAAAGCT AGACAGAGGA
  CCATAAGTGC TAGTGACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60930443	NES16200143	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46687459					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60930443	NES16200143	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112262210 () rs orientation: forward

Symbol	Name	Function Class
5031434C07Rik	RIKEN cDNA 5031434C07 gene	344 bp downstream
Lmcd1	LIM and cysteine-rich domains 1	Intron