rs46687563 SNP Detail

Summary

• ID
  rs46687563
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106074399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG GTACCCTCCT GCCCACAGCC
  T
  TGCCTGCCCT CCAATGGTCC ACTCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136933042	ENSMUSSNP3632418	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323183386	CHEV_9_106099531	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46687563					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106074399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22254	CpG island 22254	1461 bp proximal
Ppm1m	protein phosphatase 1M	within coordinates
Rr192356	regulatory region 192356	1799 bp distal
Rr205657	regulatory region 205657	801 bp proximal
Tssr3004	transcription start site region 3004	268 bp downstream
Tssr91296	transcription start site region 91296	1938 bp downstream
Tssr91297	transcription start site region 91297	1990 bp downstream