rs46687816 SNP Detail

Summary

• ID
  rs46687816
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27955991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTTTCC CTGCTGATCA
  TGTGTGTCTG GTCTGTGTCC CTTTATCAAA TGGTGTTTCT CTGCCTAAAA AGGTTGTAAT
  TGCTTTTGAA CATGATTTGG TTTTTCATCA TAATCTATGC CGTTTGTCAT AGTTACTGAA
  GAATTATACA AAGCATATCA AGTCACCATA TATCTTAAAA TGGTTTTTGA TTACAAGCTA
  W
  TGAATAATGC ATCAATCAGA CTACTTTTTA ATTTCAACTG AAGCCCAAAT GAGCCTGCAT
  AGCCATTGAA TAATTTTTTT TTTTAATGGC ACAGACTGTT TCTTGCATGT ATCTGTTTCT
  GATGCATGAA AGACTTCATA GTCTTTTTGG TAAGAGGAGG TAGAAAATTT GAATACCAGG
  TTGACTGATA CTTTGAGATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
ss52210438	NES15215885	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
rs46687816					SNP	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210438	NES15215885	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27955991 () rs orientation: forward

Symbol	Name	Function Class
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates
Rr214336	regulatory region 214336	1391 bp distal
Rr219035	regulatory region 219035	1610 bp proximal
Rr222425	regulatory region 222425	265 bp proximal
Rr224630	regulatory region 224630	1990 bp distal