rs46688341 SNP Detail

Summary

• ID
  rs46688341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27492482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAACAA TTACTTAACT
  CAAAGTTACT AAGCTCAACT ACAGCTGCTC GCCAGGGATG GGGGTGGGGG TGGGAGTGAG
  AGCTTTCCTC TGCAGGAACG GAATCTAATT TGATGAAACG TTTTTCTCTC AATTGGAAAG
  AAGAAAAGAT AAAAAAGTCT GCCTTGGGAA CTTTAGAACT AGTTTTCCGT AGACCAGTTT
  Y
  CAGGATTTAG TGAGCAGTTT GGTGTTCCTT GTGCCCCGCA CAGCTCTCTC GGGGGGGTCT
  TACTCTTAAT TTGCAGGAGT TCAGTCCCTT GCGCCTGGAA GAGCACACCC TAAAGTAAAG
  CGAGAAAGTG GTCCCCAACC AGCAATTCTT TCTCTCTAGC TGAAGCCTGT TAGGAGCAGC
  GCTCCAGGGA AAGGGCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61265600	NES16880814	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46688341					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61265600	NES16880814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27492482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1405	CpG island 1405	171 bp proximal
Gm36962	predicted gene, 36962	1158 bp upstream
Lama2	laminin, alpha 2	within coordinates
Rr224629	regulatory region 224629	within coordinates
Tssr97144	transcription start site region 97144	319 bp downstream
Tssr97145	transcription start site region 97145	329 bp downstream
Tssr97146	transcription start site region 97146	345 bp downstream
Tssr97147	transcription start site region 97147	409 bp downstream
Tssr97148	transcription start site region 97148	443 bp downstream
Tssr97149	transcription start site region 97149	533 bp downstream