rs46688543 SNP Detail

Summary

• ID
  rs46688543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130488382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCTTT GTTCATCGTC
  TTAATCCTAT GTTCAAGACC CTCTGAGTAA ATGAATGAAT CTTTAATAAT GAGCTGCTAA
  TGATCACCTT TGGAACTGGA AGGGTGTGGG AGACTCAACC GAGGGACAAA TCTTGTAAAC
  TTACAAATTC TATGATCAGA ATGAATTGAG CTATGAAAGA AGTGAAGGCC ACGGCCTGTT
  R
  GAGAACTAAA AGACCTGGCC AGAAAAACTA TACAACCAGA CTGGTCTAGA GATGTGTCCA
  GGACATGTTA CTGATAGCCA ATGAGAAAGG AACTGTCTCC TACCAGTCAG CCAATGAGAA
  AGGAACTGCC CCTCCCAGTC AGCCAATTAG AAAGGGACTG CCACCTCCAG TCAGCCAATG
  AGAAAGGGAC TGCCACCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080644	NES16590427	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46688543					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080644	NES16590427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130488382 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	135 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	1184 bp downstream
Rr398016	regulatory region 398016	394 bp downstream
Rr585194	regulatory region 585194	380 bp distal
Rr585195	regulatory region 585195	499 bp distal
Rr585196	regulatory region 585196	8 bp proximal