rs46688869 SNP Detail

Summary

• ID
  rs46688869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:57435890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAGGAA TGTGCCATCA
  CACCTAGATA TATAATACTA TATGTTTTAC TCTGGTTAGT ATTTAAGATT TGTTTTCTTT
  TTGAGACACT CTTACTCTAC AACCCAGATT GTGCTTAGAA TTCACTTACA GAGCCGGGCA
  CGGTGGCGCA TGCCTTTAAT CCCAGCACTC GGGAGGCAGA GGCAGGCAGA TTTCTGAGTT
  Y
  GAGGCCAGCC TAATCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT
  GTCTCGAAAA ACCAAAAAGG AAAATTAAAA AAAAAGAAGA AGAAGAATTC ACTTACAGTG
  CAGGCTGACC TTGAAATCAG CACAGGCAAC ACAGCAAAAT CTGTCTCAAA AATGAACAAA
  AAGACAAGTT ACTGCACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136519658	ENSMUSSNP3493516	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46688869					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57435890 () rs orientation: forward

Symbol	Name	Function Class
Cox5a	cytochrome c oxidase subunit 5A	Intron
Tssr85310	transcription start site region 85310	339 bp upstream