rs46689072 SNP Detail

Summary

• ID
  rs46689072
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57387526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGTTAA GATCTAGAGA
  AATATCTGGG CATGTCAGAG GTGGAGGAGA ATGGTTCAGG AGTGCTGGGG AAGGGACAGG
  GCATAAAGGA AAGGATTTTC AAGATCTAAG AAGGTGGAGT GTGTGTGTGT GTGTACATGT
  GTTGAGGGGC GCTCATGGGA ACTAGAAGAG CCCTTCCCTG GCAGGTTGGA GAGACAGTGG
  K
  GTTTAGGAGT TAAAGGTGAA GCAAATAGAA GCAACCTGGG CTTGGCCCTC ATGGTGAAGA
  TGCTCATGGG GTCCTAGGGA ATGAGGCAAC TAGGTGCAGG GGTGTGATGC TTAGGGTCAA
  AGCTTTGCTG GTGGGCCCCA GGGACAGAGT GATGGCAGGA GACTTAAGCC ACCTCCTCTT
  CAGCCTCCTC TTCGAACTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62807954	NES17358182	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46689072					SNP	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807954	NES17358182	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57387526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	563 bp proximal
Gm56907	predicted gene, 56907	within coordinates
Rr529266	regulatory region 529266	1935 bp distal
Rr529267	regulatory region 529267	1329 bp distal
Rr529268	regulatory region 529268	243 bp distal
Tssr5182	transcription start site region 5182	282 bp downstream
Tssr145371	transcription start site region 145371	1917 bp downstream
Tssr145372	transcription start site region 145372	241 bp downstream
Tssr145373	transcription start site region 145373	68 bp upstream
Tssr145374	transcription start site region 145374	162 bp upstream
Tssr148882	transcription start site region 148882	111 bp upstream
Tssr148883	transcription start site region 148883	18 bp upstream
Tssr148884	transcription start site region 148884	4 bp downstream
Tssr148885	transcription start site region 148885	81 bp downstream
Tssr148886	transcription start site region 148886	108 bp downstream
Tssr148887	transcription start site region 148887	132 bp downstream
Tssr148888	transcription start site region 148888	159 bp downstream
Tssr148889	transcription start site region 148889	196 bp downstream
Tssr148890	transcription start site region 148890	292 bp downstream
Tssr148891	transcription start site region 148891	410 bp downstream
Tssr148892	transcription start site region 148892	430 bp downstream
Tssr148893	transcription start site region 148893	644 bp downstream
Tssr148894	transcription start site region 148894	716 bp downstream
Tssr148895	transcription start site region 148895	1120 bp downstream
Tssr148896	transcription start site region 148896	1182 bp downstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates