rs46689278 SNP Detail

Summary

• ID
  rs46689278
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61753938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCACAT CAATGGATCC
  TCCATGGTGA GTGCCAACCC TGTGCCCACA GGAACCTGTC TATTCCCACT GGAGTACAGA
  GTCAGCCCGA GAGACTGCCC ACAGGGTAAC AGATGGCCAT CCGTGCAGCC CTCACCTCTG
  GCCGCCAACA TCCTTACTTT GCAGAAAGCA AAGAGAACAG GGCTGAGGAT GCGTCTTACC
  M
  TCTTCCTGCT TCTGCTCTTT AGGCTTTTGT TAGTCAGAGT GGGGACAAGG CACCGGGGTC
  TTTCATCTGC ATCAGGACTG AGAGTTCAAG GAAGGACACA GCTCAGGCAG GTAGAGAGTG
  TAAACGGGGA CTCAAAACCC ACTTCTCTTG CCAGTCCTCA GAATCCAGGG GTCGTAGTAC
  CCACTCTGGC TGGGAACAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61280668	NES16779853	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A		C	A	A	C		A
ss323330209	CHEV_10_61380907	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46689278					SNP	A	A	A	A	A	A	C	A	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280668	NES16779853	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61753938 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr215608	regulatory region 215608	538 bp distal
Rr215609	regulatory region 215609	1863 bp proximal