rs46689856 SNP Detail

Summary

• ID
  rs46689856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75825951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGT TCGGGACATG GGGTCTGGAA
  Y
  CTGGACTTTG AACTTCACTT CTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145965534	ENSMUSSNP3759164	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325452199	CHEV_17_75918296	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46689856					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75825951 () rs orientation: forward

Symbol	Name	Function Class
Rasgrp3	RAS, guanyl releasing protein 3	within coordinates
Rr405453	regulatory region 405453	255 bp downstream
Rr531052	regulatory region 531052	133 bp distal
Rr531053	regulatory region 531053	204 bp distal
Tssr145886	transcription start site region 145886	1666 bp upstream
Tssr149392	transcription start site region 149392	534 bp upstream