rs46689860 SNP Detail

Summary

• ID
  rs46689860
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19190744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC AGCCTACACT CCCAGCTAAG
  C
  TATAAGAGAG CTTTCAGCAG CTGCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148777428	ENSMUSSNP4618075	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322523294	CHEV_8_19140728	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46689860					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19190744 () rs orientation: forward

Symbol	Name	Function Class
Gm45826	predicted gene 45826	50 bp upstream
Spag11b	sperm associated antigen 11B	31 bp upstream
Tssr76531	transcription start site region 76531	23 bp upstream
Tssr76532	transcription start site region 76532	643 bp upstream
Tssr76533	transcription start site region 76533	701 bp upstream
Tssr76534	transcription start site region 76534	719 bp upstream
Tssr76535	transcription start site region 76535	754 bp upstream
Tssr76536	transcription start site region 76536	1876 bp upstream
Tssr80550	transcription start site region 80550	743 bp downstream
Tssr80551	transcription start site region 80551	1930 bp downstream