rs46690685 SNP Detail

Summary

• ID
  rs46690685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112426422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAT TATCGATGCT TCAAGGCAAG
  K
  TCACCTCCTC TAGATCTGGC TTCGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52696957	NES15533580	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	T	G	T	G		T	G	T		G
ss324528921	CHEV_13_113080096	CHEVERUD	SCREENING_POP	f	SNP										T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46690685					SNP	G	G	G	T	G	T	G	T	G	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696957	NES15533580	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112426422 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm55074	predicted gene, 55074	1233 bp upstream
Rr486330	regulatory region 486330	1058 bp distal
Rr486331	regulatory region 486331	256 bp distal
Tssr121099	transcription start site region 121099	1381 bp downstream
Tssr121100	transcription start site region 121100	1340 bp downstream
Tssr121101	transcription start site region 121101	1294 bp downstream
Tssr121102	transcription start site region 121102	1082 bp downstream
Tssr124046	transcription start site region 124046	736 bp upstream